SOURCE=main.cpp AmberParm.cpp \
       Frame.cpp CpptrajState.cpp ArgList.cpp PtrajMask.cpp Action_Distance.cpp \
       ParmFileList.cpp TrajinList.cpp TrajoutList.cpp ReferenceList.cpp \
       CoordFileList.cpp ActionList.cpp DataSet.cpp \
       DataSetList.cpp vectormath.cpp FrameList.cpp Action_Rmsd.cpp \
       Action_Dihedral.cpp DataFile.cpp DataFileList.cpp \
       CpptrajFile.cpp PDBfileRoutines.cpp Action_AtomMap.cpp FileIO.cpp FileIO_Std.cpp \
       FileIO_Gzip.cpp Action_Angle.cpp MpiRoutines.c FileIO_Mpi.cpp \
       Action_Strip.cpp Action.cpp AtomMask.cpp DataSet_double.cpp \
       Action_DSSP.cpp DataSet_string.cpp Action_Center.cpp FileIO_Bzip2.cpp \
       Action_Hbond.cpp DataSet_integer.cpp Action_Image.cpp Action_Surf.cpp \
       Action_Radgyr.cpp Action_Mask.cpp Action_Closest.cpp \
       NetcdfRoutines.cpp CpptrajStdio.cpp \
       Mol2FileRoutines.cpp Action_NAstruct.cpp DistRoutines.cpp AxisType.cpp \
       TorsionRoutines.cpp Action_Pucker.cpp Range.cpp Action_Outtraj.cpp \
       Action_Rms2d.cpp ProgressBar.cpp TrajectoryIO.cpp \
       TrajectoryFile.cpp BoxType.cpp CharBuffer.cpp Traj_AmberCoord.cpp \
       Traj_AmberNetcdf.cpp Traj_PDBfile.cpp Traj_AmberRestart.cpp \
       Traj_Mol2File.cpp Traj_AmberRestartNC.cpp Traj_Conflib.cpp RemdTraj.cpp \
       Name.cpp Action_Average.cpp Histogram.cpp Analysis.cpp \
       Action_DistRmsd.cpp \
       AnalysisList.cpp Analysis_Hist.cpp DataSet_XYZ.cpp Action_Radial.cpp \
       Action_Jcoupling.cpp TriangleMatrix.cpp Action_Clustering.cpp ClusterList.cpp \
       Traj_CharmmDcd.cpp Bonds.cpp FileRoutines.cpp Action_Pairwise.cpp \
       DataSet_float.cpp CoordList.cpp ptraj_stack.c ptraj_actions.c Action_PtrajAction.cpp \
       ptraj_analyze.c ptraj_evec.c ptraj_common.c ptraj_arg.c ptraj_state.c ptraj_scalar.c \
       Analysis_PtrajAnalysis.cpp ptraj_convert.cpp molsurf.c Action_Molsurf.cpp \
       Action_CheckStructure.cpp Action_DihedralScan.cpp Action_Rotdif.cpp Random.cpp \
       Integrate.cpp Analysis_Corr.cpp Action_RunningAvg.cpp Action_RmsAvgCorr.cpp \
       DataSet_Matrix.cpp ParmFile.cpp Parm_Amber.cpp Parm_PDB.cpp Parm_Mol2.cpp \
       Parm_CharmmPsf.cpp

OBJECTS=main.o AmberParm.o \
        Frame.o CpptrajState.o ArgList.o PtrajMask.o Action_Distance.o \
        ParmFileList.o TrajinList.o TrajoutList.o ReferenceList.o \
        CoordFileList.o ActionList.o DataSet.o \
        DataSetList.o vectormath.o FrameList.o Action_Rmsd.o \
        Action_Dihedral.o DataFile.o DataFileList.o \
        CpptrajFile.o PDBfileRoutines.o Action_AtomMap.o FileIO.o FileIO_Std.o \
        FileIO_Gzip.o Action_Angle.o MpiRoutines.o FileIO_Mpi.o \
        Action_Strip.o Action.o AtomMask.o DataSet_double.o \
        Action_DSSP.o DataSet_string.o Action_Center.o FileIO_Bzip2.o \
        Action_Hbond.o DataSet_integer.o Action_Image.o Action_Surf.o \
        Action_Radgyr.o Action_Mask.o Action_Closest.o \
        NetcdfRoutines.o CpptrajStdio.o \
        Mol2FileRoutines.o Action_NAstruct.o DistRoutines.o AxisType.o \
        TorsionRoutines.o Action_Pucker.o Range.o Action_Outtraj.o \
        Action_Rms2d.o ProgressBar.o TrajectoryIO.o \
        TrajectoryFile.o BoxType.o CharBuffer.o Traj_AmberCoord.o \
        Traj_AmberNetcdf.o Traj_PDBfile.o Traj_AmberRestart.o \
        Traj_Mol2File.o Traj_AmberRestartNC.o Traj_Conflib.o RemdTraj.o \
        Name.o Action_Average.o Histogram.o Analysis.o \
        Action_DistRmsd.o \
        AnalysisList.o Analysis_Hist.o DataSet_XYZ.o Action_Radial.o \
        Action_Jcoupling.o TriangleMatrix.o Action_Clustering.o ClusterList.o \
        Traj_CharmmDcd.o Bonds.o FileRoutines.o Action_Pairwise.o \
        DataSet_float.o CoordList.o ptraj_stack.o ptraj_actions.o Action_PtrajAction.o \
        ptraj_analyze.o ptraj_evec.o ptraj_common.o ptraj_arg.o ptraj_state.o ptraj_scalar.o \
        Analysis_PtrajAnalysis.o ptraj_convert.o molsurf.o Action_Molsurf.o \
        Action_CheckStructure.o Action_DihedralScan.o Action_Rotdif.o Random.o \
        Integrate.o Analysis_Corr.o Action_RunningAvg.o Action_RmsAvgCorr.o \
        DataSet_Matrix.o ParmFile.o Parm_Amber.o Parm_PDB.o Parm_Mol2.o \
        Parm_CharmmPsf.o

HEADERS=AmberParm.h \
        Frame.h CpptrajState.h ArgList.h PtrajMask.h Action.h Action_Distance.h \
        ParmFileList.h TrajinList.h TrajoutList.h ReferenceList.h \
        CoordFileList.h ActionList.h DataSet.h \
        DataSetList.h vectormath.h FrameList.h Action_Rmsd.h \
        Action_Dihedral.h DataFile.h DataFileList.h \
        CpptrajFile.h PDBfileRoutines.h Action_AtomMap.h FileIO.h FileIO_Std.h \
        FileIO_Gzip.h Action_Angle.h MpiRoutines.h FileIO_Mpi.h \
        Action_Strip.h AtomMask.h DataSet_double.h \
        Action_DSSP.h DataSet_string.h Action_Center.h FileIO_Bzip2.h \
        Action_Hbond.h DataSet_integer.h Action_Image.h Action_Surf.h \
        Action_Radgyr.h Action_Mask.h Action_Closest.h \
        NetcdfRoutines.h CpptrajStdio.h \
        Mol2FileRoutines.h Action_NAstruct.h DistRoutines.h AxisType.h \
        TorsionRoutines.h Action_Pucker.h Range.h Action_Outtraj.h \
        Action_Rms2d.h ProgressBar.h TrajectoryIO.h \
        TrajectoryFile.h BoxType.h CharBuffer.h Traj_AmberCoord.h \
        Traj_AmberNetcdf.h Traj_PDBfile.h Traj_AmberRestart.h \
        Traj_Mol2File.h Traj_AmberRestartNC.h Traj_Conflib.h RemdTraj.h \
        Name.h Action_Average.h Histogram.h Analysis.h \
        Action_DistRmsd.h \
        AnalysisList.h Analysis_Hist.h DataSet_XYZ.h Action_Radial.h \
        Action_Jcoupling.h Constants.h TriangleMatrix.h Action_Clustering.h ClusterList.h \
        Traj_CharmmDcd.h Bonds.h FileRoutines.h Action_Pairwise.h \
        DataSet_float.h CoordList.h ptraj_stack.h ptraj_actions.h Action_PtrajAction.h \
        ptraj_analyze.h ptraj_evec.h ptraj_common.h ptraj_arg.h ptraj_state.h ptraj_scalar.h \
        Analysis_PtrajAnalysis.h ptraj_convert.h molsurf.h Action_Molsurf.h \
        Action_CheckStructure.h Action_DihedralScan.h Action_Rotdif.h Random.h \
        Integrate.h Analysis_Corr.h Action_RunningAvg.h Action_RmsAvgCorr.h \
        DataSet_Matrix.h ParmFile.h ParmIO.h Parm_Amber.h Parm_PDB.h Parm_Mol2.h \
        Parm_CharmmPsf.h

